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undergraduate thesis
Model za izračun značajki peptida temeljen na sekvenci
2020. urn:nbn:hr:190:440301
Avsec, Petra
University of Rijeka
Faculty of Engineering
Department of Computer Engineering
Section of Software Engineering

Cite this document

Avsec, P. (2020). Model za izračun značajki peptida temeljen na sekvenci (Undergraduate thesis). Rijeka: University of Rijeka, Faculty of Engineering. Retrieved from https://urn.nsk.hr/urn:nbn:hr:190:440301

Avsec, Petra. "Model za izračun značajki peptida temeljen na sekvenci." Undergraduate thesis, University of Rijeka, Faculty of Engineering, 2020. https://urn.nsk.hr/urn:nbn:hr:190:440301

Avsec, Petra. "Model za izračun značajki peptida temeljen na sekvenci." Undergraduate thesis, University of Rijeka, Faculty of Engineering, 2020. https://urn.nsk.hr/urn:nbn:hr:190:440301

Avsec, P. (2020). 'Model za izračun značajki peptida temeljen na sekvenci', Undergraduate thesis, University of Rijeka, Faculty of Engineering, accessed 12 July 2024, https://urn.nsk.hr/urn:nbn:hr:190:440301

Avsec P. Model za izračun značajki peptida temeljen na sekvenci [Undergraduate thesis]. Rijeka: University of Rijeka, Faculty of Engineering; 2020 [cited 2024 July 12] Available at: https://urn.nsk.hr/urn:nbn:hr:190:440301

P. Avsec, "Model za izračun značajki peptida temeljen na sekvenci", Undergraduate thesis, University of Rijeka, Faculty of Engineering, Rijeka, 2020. Available at: https://urn.nsk.hr/urn:nbn:hr:190:440301

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Metadata
TitleModel za izračun značajki peptida temeljen na sekvenci
Title (english)Feature computation model based on peptide sequence
AuthorPetra Avsec
MentorGoran Mauša (mentor)
Committee memberKristijan Lenac (predsjednik povjerenstva)
Committee memberGoran Mauša (član povjerenstva)
GranterUniversity of Rijeka
Faculty of Engineering
(Department of Computer Engineering)
(Section of Software Engineering)
Rijeka
Defense date and country2020-09-16, Croatia
Scientific / art field,
discipline and subdiscipline		TECHNICAL SCIENCES
Computing
Abstract
U posljednje vrijeme velika se pažnja posve´cuje istraživanju peptida s antimikrobnom aktivnošću kako bi se našlo rješenje povećanoj otpornosti na antibiotike. U ovom radu stvoren je model za izračun značajki peptida od kojih neke imaju značajne uloge u antimikrobnim aktivnostima peptida i proteina. Modelu se mogu proslijediti podaci iz različitih izvora te on vraća vrijednosti svih izračunatih značajki spremljenih u datoteku csv formata. Značajke se računaju pomoću metoda dostupnih u modlAMP paketu koji je stvoren za rad s i analizu sekvenci prirodnih aminokiselina. U radu su prikazani isječci koda napisanog u Python programskom jeziku koji prikazuju kako su korištene funkcionalnosti modlAMP paketa te se analiziraju određeni podaci koji imaju značajnu ulogu u određivanju antimikrobnih aktivnosti peptida.
Abstract (english)
Recently, much attention has been devoted to the study of peptides with antimicrobial activity in order to find a solution to increased antibiotic resistance. In this research, a model was created to calculate the features of peptides, some of which have significant roles in the antimicrobial activities of peptides and proteins. The model can receive data from different sources and it returns the values of all calculated features saved in a csv format file. Features are calculated using the methods available in the modlAMP package which was created to work with and analyze natural amino acid sequences. The paper presents snippets of code written in the Python programming language that show the usage of functionalities of the modlAMP package, and analyzes certain data that play a significant role in determining the antimicrobial activity of peptides.
Keywords
Keywords (english)
Languagecroatian
URN:NBNurn:nbn:hr:190:440301
Study programmeTitle: Computer Engineering
Study programme type: university
Study level: undergraduate
Academic / professional title: sveučilišni/a prvostupnik/ prvostupnica (baccalaureus/baccalaurea) inženjer/inženjerka računarstva (sveučilišni/a prvostupnik/ prvostupnica (baccalaureus/baccalaurea) inženjer/inženjerka računarstva)
Type of resourceText
File originBorn digital
Access conditionsAccess restricted to students and staff of home institution
Terms of useLicence In copyright icon
Created on2021-09-29 07:19:45